Transcript: SMAD1-AS1:1

Basic information

LNCipedia transcript ID: SMAD1-AS1:1 
LNCipedia gene ID: SMAD1-AS1
RefSeq ID: NR_126371
Location (hg38): chr4:145514578-145517194
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 594 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126371; NR_126371.1
Alternative gene names: ENST00000513542; SMAD1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 217.8705 coding 
CPAT coding probability 17.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SMAD1-AS1:1 yes no no no

Available literature

  1. Song (2013), Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF827-5:2
4.0 SMAD1-AS1:1
4.1 SMAD1-AS1:1
5.0 SMAD1-AS1:1
5.1 SMAD1-AS1:1
5.2 SMAD1-AS1:1