Transcript: SMAD1-AS2:5

Basic information

LNCipedia transcript ID: SMAD1-AS2:5 
LNCipedia gene ID: SMAD1-AS2
Location (hg38): chr4:145497073-145502971
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1090 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250582.1|ENST00000508936.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -146.9129 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMAD1-AS2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMAD1-AS2:5
5.0 SMAD1-AS2:5
5.1 SMAD1-AS2:5
5.2 SMAD1-AS2:5