Transcript: SMAD5-AS1:4

Basic information

LNCipedia transcript ID: SMAD5-AS1:4 
LNCipedia gene ID: SMAD5-AS1
RefSeq ID: NR_026763
Location (hg38): chr5:136129513-136134890
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1810 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026763.1
Alternative gene names: SMAD5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -131.3359 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMAD5-AS1:4 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol
  2. Zavadil (1999), An antisense transcript to SMAD5 expressed in fetal and tumor tissues., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SMAD5-AS1:4
5.1 SMAD5-AS1:4
5.2 SMAD5-AS1:4