Transcript: SMC2-AS1:2

Basic information

LNCipedia transcript ID: SMC2-AS1:2 
HGNC Gene Symbol: SMC2-AS1    
HGNC Full Gene Name: SMC2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000270332
Ensembl Transcript ID: ENST00000603487
RefSeq ID: NR_121580
Location (hg38): chr9:104080024-104092474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7020 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000511183; TCONS_00015859; NONHSAT133788; ENST00000603487.1; NR_121580; NR_121580.1
Alternative gene names: ENSG00000250209; XLOC_007813; linc-GRIN3A-4; AL161791.1; ENSG00000270332.1; RP11-82L2.1; SMC2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8023 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMC2-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR13C4-1:1
3.1 lnc-OR13C4-1:1
4.0 SMC2-AS1:2
4.1 SMC2-AS1:2
5.0 SMC2-AS1:2
5.1 SMC2-AS1:2
5.2 SMC2-AS1:2