Transcript: SMCR5:1

Basic information

LNCipedia transcript ID: SMCR5:1 
HGNC Gene Symbol: SMCR5    
HGNC Full Gene Name: Smith-Magenis syndrome chromosome region, candidate 5
Ensembl Gene ID: ENSG00000226746
Ensembl Transcript ID: ENST00000543475
RefSeq ID: NR_024007
Location (hg38): chr17:17776686-17779529
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2844 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000543475.1; SMCR5-001; OTTHUMT00000443245.1; NONHSAT146103; NR_024007; NR_024007.1
Alternative gene names: ENSG00000226746.2; SMCR5; OTTHUMG00000178769.1; NCRNA00034


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1863 non-coding 
CPAT coding probability 15.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMCR5:1 yes no no no

Available literature

  1. Bi (2002), Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMCR5-1:1
4.0 SMCR5:1
4.1 SMCR5:1
5.0 SMCR5:1
5.1 SMCR5:1
5.2 SMCR5:1