Transcript: SMIM10L2B-AS1:6

Basic information

LNCipedia transcript ID: SMIM10L2B-AS1:6 
HGNC Gene Symbol: SMIM10L2B-AS1    
HGNC Full Gene Name: SMIM10L2B antisense RNA 1
Ensembl Gene ID: ENSG00000228372
Ensembl Transcript ID: ENST00000608079
Location (hg38): chrX:135059685-135123604
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608079.1; ENST00000608079.5
Alternative gene names: ENSG00000228372.3; RP11-85L21.4; ENSG00000228372.7; SMIM10L2B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.3264 non-coding 
CPAT coding probability 14.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM10L2B-AS1:6 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM127A-2:2
4.0 lnc-FAM127A-2:2
4.1 lnc-FAM127A-2:2
5.0 lnc-FAM127A-2:2
5.1 SMIM10L2B-AS1:2
5.2 SMIM10L2B-AS1:6