Transcript: SMIM10L2B-AS1:7

Basic information

LNCipedia transcript ID: SMIM10L2B-AS1:7 
HGNC Gene Symbol: SMIM10L2B-AS1    
HGNC Full Gene Name: SMIM10L2B antisense RNA 1
Ensembl Gene ID: ENSG00000228372
Ensembl Transcript ID: ENST00000453528
Location (hg38): chrX:135116758-135123952
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1027 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453528.1; RP11-85L21.4-001; OTTHUMT00000058400.1; NONHSAT138677
Alternative gene names: ENSG00000228372.2; RP11-85L21.4; OTTHUMG00000022470.1; ENSG00000228372.3; ENSG00000228372.7; SMIM10L2B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.5122 non-coding 
CPAT coding probability 14.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM10L2B-AS1:7 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM127A-2:1
4.0 lnc-FAM127A-2:1
4.1 lnc-FAM127A-2:1
5.0 lnc-FAM127A-2:1
5.1 SMIM10L2B-AS1:3
5.2 SMIM10L2B-AS1:7