Transcript: SMIM2-AS1:1

Basic information

LNCipedia transcript ID: SMIM2-AS1:1 
HGNC Gene Symbol: SMIM2-AS1    
HGNC Full Gene Name: SMIM2 antisense RNA 1
Ensembl Gene ID: ENSG00000227258
Ensembl Transcript ID: ENST00000618753
Location (hg38): chr13:44110451-44240517
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2101 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618753.4
Alternative gene names: ENSG00000227258.5; SMIM2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.5922 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SMIM2-AS1:1
4.1 SMIM2-AS1:1
5.0 SMIM2-AS1:1
5.1 SMIM2-AS1:1
5.2 SMIM2-AS1:1