Transcript: SMIM2-AS1:14

Basic information

LNCipedia transcript ID: SMIM2-AS1:14 
LNCipedia gene ID: SMIM2-AS1
Location (hg38): chr13:44110448-44241932
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3344 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227258.1|HBMT00000382166.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.4067 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM2-AS1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMIM2-AS1:14
5.0 SMIM2-AS1:14
5.1 SMIM2-AS1:14
5.2 SMIM2-AS1:14