Transcript: SMIM2-AS1:16

Basic information

LNCipedia transcript ID: SMIM2-AS1:16 
LNCipedia gene ID: SMIM2-AS1
Location (hg38): chr13:44142328-44147224
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1853 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227258.1|FTMT25100002071.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -115.512 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM2-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMIM2-AS1:16
5.0 SMIM2-AS1:16
5.1 SMIM2-AS1:16
5.2 SMIM2-AS1:16