Transcript: SMIM2-AS1:8

Basic information

LNCipedia transcript ID: SMIM2-AS1:8 
HGNC Gene Symbol: SMIM2-AS1    
HGNC Full Gene Name: SMIM2 antisense RNA 1
Ensembl Gene ID: ENSG00000227258
Ensembl Transcript ID: ENST00000444663
Location (hg38): chr13:44142546-44148030
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 499 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444663.1; C13orf44-AS1-001; OTTHUMT00000044731.1; ENST00000444663.5
Alternative gene names: ENSG00000227258.1; C13orf44-AS1; OTTHUMG00000016829.1; SMIM2-AS1; ENSG00000227258.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.8548 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM2-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERP2-1:1
4.0 SMIM2-AS1:8
4.1 SMIM2-AS1:8
5.0 SMIM2-AS1:8
5.1 SMIM2-AS1:8
5.2 SMIM2-AS1:8