Transcript: SNAI3-AS1:2

Basic information

LNCipedia transcript ID: SNAI3-AS1:2 
HGNC Gene Symbol: SNAI3-AS1    
HGNC Full Gene Name: SNAI3 antisense RNA 1
Ensembl Gene ID: ENSG00000260630
Ensembl Transcript ID: ENST00000565633
Location (hg38): chr16:88663335-88673647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 829 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565633.1; RP5-1142A6.3-005; OTTHUMT00000422577.1; NONHSAT144401
Alternative gene names: ENSG00000260630.1; RP5-1142A6.3; OTTHUMG00000173242.2; ENSG00000260630.2; SNAI3-AS1; ENSG00000260630.6; MGC23284

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5902 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAI3-AS1:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTU2-6:2
4.0 SNAI3-AS1:2
4.1 SNAI3-AS1:2
5.0 SNAI3-AS1:2
5.1 SNAI3-AS1:2
5.2 SNAI3-AS1:2