Transcript: SNAI3-AS1:3

Basic information

LNCipedia transcript ID: SNAI3-AS1:3 
HGNC Gene Symbol: SNAI3-AS1    
HGNC Full Gene Name: SNAI3 antisense RNA 1
Ensembl Gene ID: ENSG00000260630
Ensembl Transcript ID: ENST00000569786
Location (hg38): chr16:88663369-88672179
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569786.1; RP5-1142A6.3-004; OTTHUMT00000422579.1; ENST00000569786.5
Alternative gene names: ENSG00000260630.1; RP5-1142A6.3; OTTHUMG00000173242.2; ENSG00000260630.2; SNAI3-AS1; ENSG00000260630.6; MGC23284

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5902 non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAI3-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTU2-6:3
4.0 SNAI3-AS1:3
4.1 SNAI3-AS1:3
5.0 SNAI3-AS1:3
5.1 SNAI3-AS1:3
5.2 SNAI3-AS1:3