Transcript: SNAP25-AS1:1

Basic information

LNCipedia transcript ID: SNAP25-AS1:1 
LNCipedia gene ID: SNAP25-AS1
Location (hg38): chr20:10026075-10368803
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 892 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421143; ENST00000421143.1; RP5-839B4.7-003; OTTHUMT00000077988.1; NONHSAT078574
Alternative gene names: ENSG00000227906; RP5-839B4.7; ENSG00000227906.1; OTTHUMG00000031867.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4222 non-coding 
CPAT coding probability 20.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:1 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKKS-2:1
3.1 lnc-MKKS-3:1
4.0 SNAP25-AS1:1
4.1 SNAP25-AS1:1
5.0 SNAP25-AS1:1
5.1 SNAP25-AS1:1
5.2 SNAP25-AS1:1