Transcript: SNAP25-AS1:11

Basic information

LNCipedia transcript ID: SNAP25-AS1:11 
LNCipedia gene ID: SNAP25-AS1
Location (hg38): chr20:10025857-10104394
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT147154
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4222 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:11 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKKS-3:11
4.0 SNAP25-AS1:11
4.1 SNAP25-AS1:11
5.0 SNAP25-AS1:11
5.1 SNAP25-AS1:11
5.2 SNAP25-AS1:11