Transcript: SNAP25-AS1:2

Basic information

LNCipedia transcript ID: SNAP25-AS1:2 
HGNC Gene Symbol: SNAP25-AS1    
HGNC Full Gene Name: SNAP25 antisense RNA 1
Ensembl Gene ID: ENSG00000227906
Ensembl Transcript ID: ENST00000453544
Location (hg38): chr20:10104345-10368776
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 368 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453544; ENST00000453544.1; RP5-839B4.7-002; OTTHUMT00000077987.1; NONHSAT078578; ENST00000453544.5
Alternative gene names: ENSG00000227906; RP5-839B4.7; ENSG00000227906.1; OTTHUMG00000031867.1; ENSG00000227906.3; SNAP25-AS1; ENSG00000227906.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.9839 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:2 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKKS-2:2
3.1 lnc-MKKS-3:2
4.0 SNAP25-AS1:2
4.1 SNAP25-AS1:2
5.0 SNAP25-AS1:2
5.1 SNAP25-AS1:2
5.2 SNAP25-AS1:2