Transcript: SNAP25-AS1:20

Basic information

LNCipedia transcript ID: SNAP25-AS1:20 
LNCipedia gene ID: SNAP25-AS1
Location (hg38): chr20:10104141-10219501
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 639 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227906.3|ENST00000451151.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -105.4854 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:20 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNAP25-AS1:20
5.0 SNAP25-AS1:20
5.1 SNAP25-AS1:20
5.2 SNAP25-AS1:20