Transcript: SNAP25-AS1:4

Basic information

LNCipedia transcript ID: SNAP25-AS1:4 
HGNC Gene Symbol: SNAP25-AS1    
HGNC Full Gene Name: SNAP25 antisense RNA 1
Ensembl Gene ID: ENSG00000227906
Ensembl Transcript ID: ENST00000603542
Location (hg38): chr20:10023812-10219754
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3207 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078572; ENST00000603542.1; ENST00000603542.5
Alternative gene names: ENSG00000227906.3; SNAP25-AS1; ENSG00000227906.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4222 non-coding 
CPAT coding probability 22.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:4 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKKS-3:7
4.0 SNAP25-AS1:4
4.1 SNAP25-AS1:4
5.0 SNAP25-AS1:4
5.1 SNAP25-AS1:4
5.2 SNAP25-AS1:4