Transcript: SNAP25-AS1:6

Basic information

LNCipedia transcript ID: SNAP25-AS1:6 
HGNC Gene Symbol: SNAP25-AS1    
HGNC Full Gene Name: SNAP25 antisense RNA 1
Ensembl Gene ID: ENSG00000227906
Ensembl Transcript ID: ENST00000426491
Location (hg38): chr20:10074437-10219506
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 804 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426491; ENST00000426491.1; RP5-839B4.7-001; OTTHUMT00000077986.1; NONHSAT078576; ENST00000426491.5
Alternative gene names: ENSG00000227906; RP5-839B4.7; ENSG00000227906.1; OTTHUMG00000031867.1; ENSG00000227906.3; SNAP25-AS1; ENSG00000227906.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.547 non-coding 
CPAT coding probability 8.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:6 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKKS-2:3
3.1 lnc-MKKS-3:3
4.0 SNAP25-AS1:6
4.1 SNAP25-AS1:6
5.0 SNAP25-AS1:6
5.1 SNAP25-AS1:6
5.2 SNAP25-AS1:6