Transcript: SNAP25-AS1:7

Basic information

LNCipedia transcript ID: SNAP25-AS1:7 
LNCipedia gene ID: SNAP25-AS1
RefSeq ID: NR_040710
Location (hg38): chr20:10023812-10219506
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2959 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040710; NR_040710.1
Alternative gene names: ; SNAP25-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4222 non-coding 
CPAT coding probability 22.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:7 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKKS-3:9
4.0 SNAP25-AS1:7
4.1 SNAP25-AS1:7
5.0 SNAP25-AS1:7
5.1 SNAP25-AS1:7
5.2 SNAP25-AS1:7