Transcript: SNAP25-AS1:8

Basic information

LNCipedia transcript ID: SNAP25-AS1:8 
LNCipedia gene ID: SNAP25-AS1
Location (hg38): chr20:10104141-10219315
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 453 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000451151; ENST00000451151.1; RP5-839B4.7-005; OTTHUMT00000077990.1; NONHSAT078577
Alternative gene names: ENSG00000227906; RP5-839B4.7; ENSG00000227906.1; OTTHUMG00000031867.1; ENSG00000227906.3; SNAP25-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.4854 non-coding 
CPAT coding probability 5.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:8 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKKS-2:4
3.1 lnc-MKKS-3:4
4.0 SNAP25-AS1:8
4.1 SNAP25-AS1:8
5.0 SNAP25-AS1:8
5.1 SNAP25-AS1:8
5.2 SNAP25-AS1:8