Transcript: SNAP25-AS1:9

Basic information

LNCipedia transcript ID: SNAP25-AS1:9 
HGNC Gene Symbol: SNAP25-AS1    
HGNC Full Gene Name: SNAP25 antisense RNA 1
Ensembl Gene ID: ENSG00000227906
Ensembl Transcript ID: ENST00000451151
Location (hg38): chr20:10103727-10219315
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 867 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451151.5
Alternative gene names: ENSG00000227906.7; SNAP25-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.8532 non-coding 
CPAT coding probability 5.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:9 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SNAP25-AS1:9
4.1 SNAP25-AS1:9
5.0 SNAP25-AS1:9
5.1 SNAP25-AS1:9
5.2 SNAP25-AS1:9