Transcript: SNAP47-AS1:1

Basic information

LNCipedia transcript ID: SNAP47-AS1:1 
LNCipedia gene ID: SNAP47-AS1
Location (hg38): chr1:227743831-227747194
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1711 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000510939
Alternative gene names: ENSG00000251190;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1672 non-coding 
CPAT coding probability 13.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP47-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JMJD4-1:1
3.1 lnc-JMJD4-1:1
4.0 SNAP47-AS1:1
4.1 SNAP47-AS1:1
5.0 SNAP47-AS1:1
5.1 SNAP47-AS1:1
5.2 SNAP47-AS1:1