Transcript: SNCA-AS1:1

Basic information

LNCipedia transcript ID: SNCA-AS1:1 
LNCipedia gene ID: SNCA-AS1
RefSeq ID: NR_045481
Location (hg38): chr4:89836401-89841991
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT097403; NR_045481; NR_045481.1
Alternative gene names: ; SNCA-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.6865 non-coding 
CPAT coding probability 20.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNCA-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMRN1-1:3
4.0 SNCA-AS1:1
4.1 SNCA-AS1:1
5.0 SNCA-AS1:1
5.1 SNCA-AS1:1
5.2 SNCA-AS1:1