Transcript: SNCA-AS1:3

Basic information

LNCipedia transcript ID: SNCA-AS1:3 
HGNC Gene Symbol: SNCA-AS1    
HGNC Full Gene Name: SNCA antisense RNA 1
Ensembl Gene ID: ENSG00000247775
Ensembl Transcript ID: ENST00000501215
Location (hg38): chr4:89836424-89840595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2646 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501215; ENST00000501215.1; RP11-67M1.1-001; OTTHUMT00000364074.1; NONHSAT097404
Alternative gene names: ENSG00000247775; RP11-67M1.1; ENSG00000247775.2; OTTHUMG00000161186.1; SNCA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.2311 non-coding 
CPAT coding probability 18.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNCA-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMRN1-1:2
3.1 lnc-MMRN1-1:2
4.0 SNCA-AS1:3
4.1 SNCA-AS1:3
5.0 SNCA-AS1:3
5.1 SNCA-AS1:3
5.2 SNCA-AS1:3