Transcript: SND1-IT1:4

Basic information

LNCipedia transcript ID: SND1-IT1:4 
HGNC Gene Symbol: SND1-IT1    
HGNC Full Gene Name: SND1 intronic transcript 1
RefSeq ID: NR_027330
Location (hg38): chr7:127997509-128000077
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2569 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT123162; NR_027330; NR_027330.1
Alternative gene names: NAG8; NSG-X; SND1-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.2979 non-coding 
CPAT coding probability 9.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SND1-IT1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEP-5:4
4.0 SND1-IT1:4
4.1 SND1-IT1:4
5.0 SND1-IT1:4
5.1 SND1-IT1:4
5.2 SND1-IT1:4