Transcript: SNHG10:6

Basic information

LNCipedia transcript ID: SNHG10:6 
HGNC Gene Symbol: SNHG10    
HGNC Full Gene Name: small nucleolar RNA host gene 10
Ensembl Gene ID: ENSG00000247092
Ensembl Transcript ID: ENST00000500370
Location (hg38): chr14:95532297-95534800
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1531 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500370; ENST00000500370.2; SNHG10-001; OTTHUMT00000414545.1; NONHSAT039452
Alternative gene names: ENSG00000247092; SNHG10; ENSG00000247092.2; OTTHUMG00000171635.1; ENSG00000247092.6; FLJ40557; NCRNA00063; LINC00063


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0589 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG10:6 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf49-4:3
3.1 lnc-C14orf49-4:3
4.0 SNHG10:6
4.1 SNHG10:6
5.0 SNHG10:6
5.1 SNHG10:6
5.2 SNHG10:6