Transcript: SNHG11:11

Basic information

LNCipedia transcript ID: SNHG11:11 
LNCipedia gene ID: SNHG11
Location (hg38): chr20:38446712-38450921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 984 bp
Exons: 5
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA842:2
Alternative gene names: LINC00101


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.7575 non-coding 
CPAT coding probability 11.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG11:11 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SNHG11:11
4.1 SNHG11:11
5.0 SNHG11:11
5.1 SNHG11:11
5.2 SNHG11:11