Transcript: SNHG11:13

Basic information

LNCipedia transcript ID: SNHG11:13 
HGNC Gene Symbol: SNHG11    
HGNC Full Gene Name: small nucleolar RNA host gene 11
Ensembl Gene ID: ENSG00000174365
Ensembl Transcript ID: ENST00000440918
Location (hg38): chr20:38446716-38450363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440918; ENST00000440918.1; SNHG11-012; OTTHUMT00000079187.1; NONHSAT079680; ENST00000440918.5
Alternative gene names: ENSG00000174365; SNHG11; ENSG00000174365.14; OTTHUMG00000032449.1; ENSG00000174365.15; ENSG00000174365.19; LINC00101


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.0158 non-coding 
CPAT coding probability 8.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG11:13 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALGAPB-1:8
3.1 lnc-RALGAPB-1:8
4.0 SNHG11:13
4.1 SNHG11:13
5.0 SNHG11:13
5.1 SNHG11:13
5.2 SNHG11:13