Transcript: SNHG11:3

Basic information

LNCipedia transcript ID: SNHG11:3 
LNCipedia gene ID: SNHG11
RefSeq ID: NR_003239
Location (hg38): chr20:38446654-38450921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1087 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT079673; NR_003239; NR_003239.1
Alternative gene names: LINC00101; SNHG11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.7575 non-coding 
CPAT coding probability 11.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG11:3 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RALGAPB-1:16
4.0 SNHG11:3
4.1 SNHG11:3
5.0 SNHG11:3
5.1 SNHG11:3
5.2 SNHG11:3