Transcript: SNHG11:35

Basic information

LNCipedia transcript ID: SNHG11:35 
LNCipedia gene ID: SNHG11
Location (hg38): chr20:38446672-38450921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 983 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000174365.15|ENST00000449351.1
Alternative gene names: LINC00101


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.7575 non-coding 
CPAT coding probability 6.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG11:35 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNHG11:35
5.0 SNHG11:35
5.1 SNHG11:35
5.2 SNHG11:35