Transcript: SNHG17:2

Basic information

LNCipedia transcript ID: SNHG17:2 
LNCipedia gene ID: SNHG17
RefSeq ID: NR_027241
Location (hg38): chr20:38420592-38435375
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1186 bp
Exons: 7
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT079656; NR_027241.2
Alternative gene names: ; SNHG17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -89.375 non-coding 
CPAT coding probability 18.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG17:2 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1755-5:13
4.0 SNHG17:2
4.1 SNHG17:2
5.0 SNHG17:2
5.1 SNHG17:2
5.2 SNHG17:2