Transcript: SNHG17:20

Basic information

LNCipedia transcript ID: SNHG17:20 
HGNC Gene Symbol: SNHG17    
HGNC Full Gene Name: small nucleolar RNA host gene 17
Ensembl Gene ID: ENSG00000196756
Ensembl Transcript ID: ENST00000414142
Location (hg38): chr20:38420593-38435273
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2102 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414142; ENST00000414142.1; RP4-564F22.2-005; OTTHUMT00000079165.1; NONHSAT079661; ENST00000414142.5
Alternative gene names: ENSG00000196756; RP4-564F22.2; ENSG00000196756.5; OTTHUMG00000032442.1; ENSG00000196756.7; SNHG17; ENSG00000196756.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7361 non-coding 
CPAT coding probability 7.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:20 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-3:7
3.1 lnc-KIAA1755-5:7
4.0 SNHG17:20
4.1 SNHG17:20
5.0 SNHG17:20
5.1 SNHG17:20
5.2 SNHG17:20