Transcript: SNHG17:4

Basic information

LNCipedia transcript ID: SNHG17:4 
LNCipedia gene ID: SNHG17
Location (hg38): chr20:38419658-38435363
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1101 bp
Exons: 7
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA870:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.375 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:4 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SNHG17:4
4.1 SNHG17:4
5.0 SNHG17:4
5.1 SNHG17:4
5.2 SNHG17:4