Transcript: SNHG20:1

Basic information

LNCipedia transcript ID: SNHG20:1 
LNCipedia gene ID: SNHG20
Location (hg38): chr17:77086716-77099174
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000568056.1; LINC00338-005; OTTHUMT00000436190.2; NONHSAT056103
Alternative gene names: ENSG00000234912.3; LINC00338; OTTHUMG00000132169.4; PRO0872; FLJ25582; DKFZp686L05235; SCARNA16HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.1193 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG20:1 yes no no no

Available literature

  1. Liu (2017), Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition., Biomed. Pharmacother.
  2. Schattner (2006), A computational screen for mammalian pseudouridylation guide H/ACA RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC14L1-1:1
4.0 SNHG20:1
4.1 SNHG20:1
5.0 SNHG20:1
5.1 SNHG20:1
5.2 SNHG20:1