Transcript: SNHG20:4

Basic information

LNCipedia transcript ID: SNHG20:4 
LNCipedia gene ID: SNHG20
RefSeq ID: NR_027058
Location (hg38): chr17:77088643-77094986
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2169 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT056107; NR_027058; NR_027058.1
Alternative gene names: PRO0872; FLJ25582; DKFZp686L05235; SCARNA16HG; SNHG20


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 4.604 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG20:4 yes no no no

Available literature

  1. Liu (2017), Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition., Biomed. Pharmacother.
  2. Schattner (2006), A computational screen for mammalian pseudouridylation guide H/ACA RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC14L1-1:12
4.0 SNHG20:4
4.1 SNHG20:4
5.0 SNHG20:4
5.1 SNHG20:4
5.2 SNHG20:4