Transcript: SNHG20:5

Basic information

LNCipedia transcript ID: SNHG20:5 
LNCipedia gene ID: SNHG20
Location (hg38): chr17:77088673-77094986
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2139 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000434411.1; LINC00338-001; OTTHUMT00000255219.2
Alternative gene names: ENSG00000234912.3; LINC00338; OTTHUMG00000132169.4; ENSG00000234912.5; PRO0872; FLJ25582; DKFZp686L05235; SCARNA16HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 4.604 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG20:5 yes no no no

Available literature

  1. Liu (2017), Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition., Biomed. Pharmacother.
  2. Schattner (2006), A computational screen for mammalian pseudouridylation guide H/ACA RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC14L1-1:4
4.0 SNHG20:5
4.1 SNHG20:5
5.0 SNHG20:5
5.1 SNHG20:5
5.2 SNHG20:5