Transcript: SNHG27:14

Basic information

LNCipedia transcript ID: SNHG27:14 
HGNC Gene Symbol: SNHG27    
HGNC Full Gene Name: small nucleolar RNA host gene 27
Ensembl Gene ID: ENSG00000251676
Ensembl Transcript ID: ENST00000514222
Location (hg38): chr4:131773547-131775036
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 680 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007625; ENST00000514222; ENST00000514222.1; RP11-614F17.2-002; OTTHUMT00000364189.1; NONHSAT098324
Alternative gene names: XLOC_003690; linc-PCDH10-2; ENSG00000251676; RP11-614F17.2; ENSG00000251676.1; OTTHUMG00000161213.2; SNHG27


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9882 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG27:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH10-3:2
3.1 lnc-PCDH10-4:2
4.0 lnc-PCDH10-4:2
4.1 lnc-PCDH10-4:2
5.0 lnc-PCDH10-4:2
5.1 SNHG27:7
5.2 SNHG27:14