Transcript: SNHG3:2

Basic information

LNCipedia transcript ID: SNHG3:2 
LNCipedia gene ID: SNHG3
RefSeq ID: NR_036473
Location (hg38): chr1:28505943-28510892
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2346 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT001953; NR_036473; NR_036473.1
Alternative gene names: U17HG; U17HG-A; NCRNA00014; SNHG3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 19.8187 non-coding 
CPAT coding probability 6.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG3:2 yes no no no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  2. Zhang (2016), SNHG3 correlates with malignant status and poor prognosis in hepatocellular carcinoma., Tumour Biol.
  3. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  4. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  5. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  6. Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHACTR4-2:5
4.0 SNHG3:2
4.1 SNHG3:2
5.0 SNHG3:2
5.1 SNHG3:2
5.2 SNHG3:2