Transcript: SNHG3:5
Basic information
LNCipedia transcript ID: SNHG3:5
HGNC Gene Symbol: SNHG3
HGNC Full Gene Name:
small nucleolar RNA host gene 3
Ensembl Gene ID:
ENSG00000242125
Ensembl Transcript ID:
ENST00000437681
Location (hg38): chr1:28506351-28509633
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2614 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437681.1; SNHG3-002; OTTHUMT00000010374.1; NONHSAT001955
Alternative gene names: ENSG00000242125.1; SNHG3; OTTHUMG00000003657.1; ENSG00000242125.2; ENSG00000242125.3; U17HG; U17HG-A; NCRNA00014
RNA sequence:
Structure:
Protein coding potential
In stringent set: no
Locus conservation
Available literature
- Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
- Zhang (2016), SNHG3 correlates with malignant status and poor prognosis in hepatocellular carcinoma., Tumour Biol.
- Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
- Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
- Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
- Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 3.1 | lnc-PHACTR4-2:3 |
| 4.0 | SNHG3:5 |
| 4.1 | SNHG3:5 |
| 5.0 | SNHG3:5 |
| 5.1 | SNHG3:5 |
| 5.2 | SNHG3:5 |