Transcript: SNHG3:6

Basic information

LNCipedia transcript ID: SNHG3:6 
LNCipedia gene ID: SNHG3
Location (hg38): chr1:28507366-28507571
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 206 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT001956; ENST00000364938.1
Alternative gene names: ENSG00000242125.2; SNHG3; U17HG; U17HG-A; NCRNA00014


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 13.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG3:6 yes no no no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  2. Zhang (2016), SNHG3 correlates with malignant status and poor prognosis in hepatocellular carcinoma., Tumour Biol.
  3. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  4. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  5. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  6. Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHACTR4-2:8
4.0 SNHG3:6
4.1 SNHG3:6
5.0 SNHG3:6
5.1 SNHG3:6
5.2 SNHG3:6