Transcript: SNHG5:3

Basic information

LNCipedia transcript ID: SNHG5:3 
HGNC Gene Symbol: SNHG5    
HGNC Full Gene Name: small nucleolar RNA host gene 5
Ensembl Gene ID: ENSG00000203875
Ensembl Transcript ID: ENST00000622963
Location (hg38): chr6:85665560-85678736
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 753 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622963.3
Alternative gene names: ENSG00000203875.10; SNHG5; MGC16362; bA33E24.2; U50HG; NCRNA00044; LINC00044


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.3726 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG5:3 no no no no

Available literature

  1. Damas (2016), SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization., Nat Commun
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Fadista (2014), Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism., Proc. Natl. Acad. Sci. U.S.A.
  4. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE
  5. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  6. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  7. Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
  8. Tanaka (2000), Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma., Genes Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SNHG5:3
4.1 SNHG5:3
5.0 SNHG5:3
5.1 SNHG5:3
5.2 SNHG5:3