Transcript: SNHG5:7

Basic information

LNCipedia transcript ID: SNHG5:7 
LNCipedia gene ID: SNHG5
RefSeq ID: NR_003038
Location (hg38): chr6:85677007-85678733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 6
Sources: long non-coding rna db - lncrnadb.com; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT113854; NR_003038.2; NR_003038
Alternative gene names: SNHG5; U50HG; MGC16362; bA33E24.2; NCRNA00044; LINC00044


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -371.0603 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG5:7 no no no no

Available literature

  1. Damas (2016), SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization., Nat Commun
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Fadista (2014), Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism., Proc. Natl. Acad. Sci. U.S.A.
  4. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE
  5. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  6. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  7. Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
  8. Tanaka (2000), Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma., Genes Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYNCRIP-2:12
4.0 SNHG5:7
4.1 SNHG5:7
5.0 SNHG5:7
5.1 SNHG5:7
5.2 SNHG5:7