Transcript: SNHG6:14

Basic information

LNCipedia transcript ID: SNHG6:14 
HGNC Gene Symbol: SNHG6    
HGNC Full Gene Name: small nucleolar RNA host gene 6
Ensembl Gene ID: ENSG00000245910
Ensembl Transcript ID: ENST00000521399
Location (hg38): chr8:66921987-66925541
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 302 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521399; ENST00000521399.1; SNHG6-006; OTTHUMT00000380024.1; ENST00000521399.5
Alternative gene names: ENSG00000245910; SNHG6; ENSG00000245910.2; OTTHUMG00000164743.2; ENSG00000245910.4; ENSG00000245910.8; U87HG; HBII-276HG; NCRNA00058


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -216.5345 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.102563261
seqAAMPVWWRRRRLRARSWALRAYRLL
covF1Prop0.380952381

In stringent set: no

Locus conservation

Locus conservation?
SNHG6:14 no no no no

Available literature

  1. Yan (2017), LncRNA SNHG6 is Associated with Poor Prognosis of Gastric Cancer and Promotes Cell Proliferation and EMT through Epigenetically Silencing p27 and Sponging miR-101-3p., Cell. Physiol. Biochem.
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  4. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  5. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  6. Makarova (2005), Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF24-2:7
3.1 lnc-TCF24-2:4
4.0 SNHG6:14
4.1 SNHG6:14
5.0 SNHG6:14
5.1 SNHG6:14
5.2 SNHG6:14