Transcript: SNRK-AS1:2

Basic information

LNCipedia transcript ID: SNRK-AS1:2 
HGNC Gene Symbol: SNRK-AS1    
HGNC Full Gene Name: SNRK antisense RNA 1
Ensembl Gene ID: ENSG00000234617
Ensembl Transcript ID: ENST00000422681
Location (hg38): chr3:43349644-43351962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 750 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422681.1; SNRK-AS1-001; OTTHUMT00000344321.1
Alternative gene names: ENSG00000234617.1; SNRK-AS1; OTTHUMG00000156490.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.7697 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNRK-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANO10-1:2
4.0 SNRK-AS1:2
4.1 SNRK-AS1:2
5.0 SNRK-AS1:2
5.1 SNRK-AS1:2
5.2 SNRK-AS1:2