Transcript: SNRK-AS1:5

Basic information

LNCipedia transcript ID: SNRK-AS1:5 
LNCipedia gene ID: SNRK-AS1
Ensembl Gene ID: ENSG00000271941
Ensembl Transcript ID: ENST00000607513
Location (hg38): chr3:43346923-43347643
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 721 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607513.1
Alternative gene names: ENSG00000271941.1; RP11-188P20.3; ; AC104184.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 640.451 coding 
CPAT coding probability 5.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNRK-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANO10-1:5
4.0 SNRK-AS1:5
4.1 SNRK-AS1:5
5.0 SNRK-AS1:5
5.1 SNRK-AS1:5
5.2 SNRK-AS1:5