Transcript: SOD2-OT1:4

Basic information

LNCipedia transcript ID: SOD2-OT1:4 
HGNC Gene Symbol: SOD2-OT1    
HGNC Full Gene Name: SOD2 overlapping transcript 1
Ensembl Gene ID: ENSG00000285427
Ensembl Transcript ID: ENST00000535372
RefSeq ID: NR_037166
Location (hg38): chr6:159760258-159762332
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1718 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115872; NR_037166.1; ENST00000535372.1
Alternative gene names: LOC100129518; ENSG00000285427.1; SOD2-OT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.5361 non-coding 
CPAT coding probability 11.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOD2-OT1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCP1-1:2
4.0 lnc-TCP1-1:2
4.1 lnc-TCP1-1:2
5.0 lnc-TCP1-1:2
5.1 SOD2-OT1:2
5.2 SOD2-OT1:4