Transcript: SOS1-IT1:3

Basic information

LNCipedia transcript ID: SOS1-IT1:3 
HGNC Gene Symbol: SOS1-IT1    
HGNC Full Gene Name: SOS1 intronic transcript 1
Ensembl Gene ID: ENSG00000229692
Ensembl Transcript ID: ENST00000609942
Location (hg38): chr2:38992824-38993836
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 664 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609942.1
Alternative gene names: ENSG00000229692.3; SOS1-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.0096 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOS1-IT1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX57-2:2
4.0 SOS1-IT1:3
4.1 SOS1-IT1:3
5.0 SOS1-IT1:3
5.1 SOS1-IT1:3
5.2 SOS1-IT1:3