Transcript: SOX1-OT:15

Basic information

LNCipedia transcript ID: SOX1-OT:15 
LNCipedia gene ID: SOX1-OT
RefSeq ID: NR_120392
Location (hg38): chr13:111972310-112108015
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 704 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120392; NR_120392.1
Alternative gene names: ; LINC00403


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.5589 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX1-OT:15 yes no no no

Available literature

  1. Ahmad (2017), Expression of a SOX1 overlapping transcript in neural differentiation and cancer models., Cell. Mol. Life Sci.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX1-2:6
4.0 LINC00403:1
4.1 LINC00403:1
5.0 LINC00403:1
5.1 SOX1-OT:2
5.2 SOX1-OT:15