Transcript: SOX1-OT:17

Basic information

LNCipedia transcript ID: SOX1-OT:17 
LNCipedia gene ID: SOX1-OT
Location (hg38): chr13:112056833-112110605
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 3403 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224243.1|MICT00000099389.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.9566 non-coding 
CPAT coding probability 12.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX1-OT:17 yes no no no

Available literature

  1. Ahmad (2017), Expression of a SOX1 overlapping transcript in neural differentiation and cancer models., Cell. Mol. Life Sci.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00403:8
5.0 LINC00403:8
5.1 SOX1-OT:4
5.2 SOX1-OT:17